Methylated loci across grapevine samples

Question: How are methylated sites distributed around the same gene across grapevine samples?
Source cited by the existing saved figure: https://pmc.ncbi.nlm.nih.gov/articles/PMC11155169/
Assembly and source release: not recorded in the saved example. Verify before reanalysis.
Processing: Gene GFF3 and Bismark bedGraph signals were used, as recorded in the saved example.

Set interpretation: Seventeen sample layers and a gene-structure layer, as encoded by the eighteen sets.
Sets: 18; annotation rows: [7, 15, 10, 7, 15, 3, 1, 11, 9, 4, 3, 10, 3, 12, 14, 8, 13, 46]
Window settings recovered from saved figure: {"fixed_window": true, "window_size": 50, "n_win_factor": 1}

These TSV files are extracted from the saved interactive figure. They are generated/prepared tables, not the original raw GFF3, BAM or bedGraph files. Open open-figure.html with the two included libraries beside it for offline viewing. The HTML contains the saved configuration and data. Import it through Select Data > Edit an existing chromoMap to reproduce the configured view. Alternatively upload TSV pairs to the corresponding sets and configure the representation yourself.

The package does not establish the original study processing or the biological validity of a visual pattern. See the cited source and resolve assembly/release details before scientific reuse.

Data attribution and reuse: retain the cited study/source attribution and verify upstream data terms before redistribution or secondary analysis. The chromoMap software licence is separate from source-data terms.
